Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015835721.1_cds_XP_016506015.1_19287
CDS Infomation

[gene=LOC107823823] [db_xref=GeneID:107823823] [protein=RNA polymerase sigma factor sigB-like isoform X2] [protein_id=XP_016506015.1] [location=join(17014..17101,18809..19041,19429..20019,20676..20906,21009..21149,21257..21457,21626..21655)] [gbkey=CDS]
Sequence

ATGTCTTGCCTATTGCCTCAATTCAAGTGTCTGCCTGATACTTTTGCCCTTAGCTTCAAA
ACCCATCAACAGTCTGCCCCTCAACGCTCAAAAGGTAGAGATCCTTCTCAATTGTGGACT
CAATGTGTCTTATCCACTTCATCAACAGCGGCAGCTACAGTGCTTGATATTGAGAAGCTA
CAGTTACCATCTATAGACAGATCATGGAAAACACCATTGGTAAATGCCACAACCACAGAA
GTAGATGTACAGAAGCTAAAATTGCAGTCATTGGAGGCTCATTCACCAGGATACAGTGGA
GGAGTTGCTCTGTCCACTGAGGCAAACACTAAAGCTGCTTTAGCTACTGAAAATCTTCTT
ACGGGTGAAGAAGCTGTAATAGCTGCTGCTGCTGCTGAAGCAGTTGCTTTGGCAAAAGCT
GCATTAAAAGTTGCAAAAGATGCTGTGATGATGGTCGGCCATAACAACTCAGATGACACT
GTGGCAGGTGTGGATACTACCCAGCTGCTTGAGAGGTTTCAACCTGGCGAGACGGGGCGA
AACAGCATAGTTGGGGAGCTAAAGGCAAGTGAGATGAGATGGAGCGAAAGTAATTCATCC
GGAAACTCACATACAGATTCTGAGGACCTGGAACCAACACATGAAGAGCTGGAACTTCTT
CAAACAGAGCTTTTAAATGGTATAGCTGTAAGATCTAAGCGTCAAAATGAACGGAAGGCT
AGAAGAGCGAGAGCAGTAGAGAGGGCTGCAGCCAATGTTGTGTCAGTGAAGTCTGGCTCC
GCAGGCCGAAAAAAGCGTGCGTCAGTACAGGATGTTGATTACTCTGATCCATTGCGTTAC
TTGAGAGGAACAACAAGTACTTCTAGGCTGCTCACTGCATCTGAAGAACATAAGTTGTCA
GAAGGAATACAGGAGCTACTGAAGTTGGAAAGGCTTCAGGAGGAGCTTGCAGAGCGCTGT
GGGGGTCAGCCCACTTCCGCACAATGGGCTGCTGCAGCCGGAGTTGACCTGAAGACCCTA
CGGAAGCATATAAACTATGGAATTCTTTGTAAAGATAAAATGATTAAGAGCAACATAAGG
CTTGTTATATCCATTGCCAAAAATTATCAAGGGGCAGGAATGAATCTTCAAGATTTGGTT
CAGGAAGGATGTCGTGGCCTTGTAAGGGGTGCTGAAAAGTTTGACGCTTCAAAGGGTTTT
AAGTTCTCAACATACGCTCATTGGTGGATTAAACAGGCTGTTAGGAAGTCGCTTTCTGAT
CAATCTAGGACAATTCGGTTGCCATTTCACATGGTCGAGGCAACTTATAGAGTTAAGGAA
GCAAGAAAGCAATTATATAGTGAAAATGGTAGACATCCTGATGAGGAGGAACTAGCTGAA
GCAACGGGATTGTCAATGAAGAGGCTCACTGCTGCGATGCTAACTCCTAAAGCTCCGAGA
TCACTTGACCAGAAAATTGGATTCAACCAAAATCTCAAACCTTCGGGACGCGGCCCTTCC
CCGGACCCTACGTGA

Peptide Sequence

PEP ID

XP_016506015.1
PEP Infomation

PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Nicotiana tabacum]
Sequence

MSCLLPQFKCLPDTFALSFKTHQQSAPQRSKGRDPSQLWTQCVLSTSSTAAATVLDIEKL
QLPSIDRSWKTPLVNATTTEVDVQKLKLQSLEAHSPGYSGGVALSTEANTKAALATENLL
TGEEAVIAAAAAEAVALAKAALKVAKDAVMMVGHNNSDDTVAGVDTTQLLERFQPGETGR
NSIVGELKASEMRWSESNSSGNSHTDSEDLEPTHEELELLQTELLNGIAVRSKRQNERKA
RRARAVERAAANVVSVKSGSAGRKKRASVQDVDYSDPLRYLRGTTSTSRLLTASEEHKLS
EGIQELLKLERLQEELAERCGGQPTSAQWAAAAGVDLKTLRKHINYGILCKDKMIKSNIR
LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDEEELAEATGLSMKRLTAAMLTPKAPR
SLDQKIGFNQNLKPSGRGPSPDPT

Transcript Sequence

Gene sequence data has not been registered.